Breakfast Egg Muffins with Bacon

Featured in: Daily Home Plates

These wholesome egg muffins combine six large eggs with shredded cheddar, crisp bacon, and diced vegetables for a protein-rich start to your day. The batter comes together quickly in one bowl—simply whisk eggs with milk, fold in your mix-ins, and bake until golden and set. Each muffin delivers 11 grams of protein while staying naturally gluten-free.

Perfect for meal prep, these handheld delights keep well in the refrigerator for five days or freeze beautifully for longer storage. Customize with sausage, ham, or vegetables like spinach and mushrooms to suit your taste. Reheat individual portions in the microwave for a satisfying breakfast in seconds.

Updated on Sun, 01 Feb 2026 08:58:00 GMT
Golden-brown Breakfast Egg Muffins with melted cheddar cheese, crisp bacon, and sautéed bell peppers, served warm on a rustic plate. Save
Golden-brown Breakfast Egg Muffins with melted cheddar cheese, crisp bacon, and sautéed bell peppers, served warm on a rustic plate. | freshkhubz.com

Sunday mornings used to mean chaos in my kitchen until I started baking these egg muffins the night before. The smell of melted cheddar and crispy bacon wafting through the house while I sipped my coffee became my favorite kind of calm. I'd pull them from the oven, golden and puffy, and suddenly breakfast for the week was handled. No more scrambling eggs at dawn or skipping meals because I overslept. Just warm, savory little rounds that made every morning feel a bit more together.

I remember the first time I brought a batch to a friend's brunch gathering, still warm in a basket lined with a kitchen towel. Everyone grabbed two, then came back for thirds. One friend who claimed she never ate breakfast asked for the recipe on the spot. Watching people enjoy something I'd made so easily, something that felt both humble and generous, reminded me why I love cooking for others.

Ingredients

  • Eggs: The foundation of these muffins, eggs puff up beautifully in the oven and create that tender, custardy texture everyone loves.
  • Milk: A splash of milk keeps the eggs soft and prevents them from turning rubbery, even after reheating.
  • Shredded cheddar cheese: Cheddar melts into little pockets of sharp, gooey goodness, but feel free to swap in pepper jack or Gruyère if you want a different vibe.
  • Diced bell peppers: I use a mix of red and yellow for color and a hint of sweetness that balances the savory bacon.
  • Diced onions: Yellow or white onions add a mild bite, but I've also used green onions when I wanted something gentler.
  • Cooked and crumbled bacon: Crispy bacon gives each muffin a smoky punch, though cooked sausage or diced ham work just as well.
  • Salt, black pepper, garlic powder, and paprika: These simple seasonings bring warmth and depth without overpowering the eggs or vegetables.
  • Cooking spray or olive oil: Greasing the muffin tin well is essential so the muffins pop out cleanly and don't stick to the edges.

Instructions

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Preheat and Prep:
Turn your oven to 350°F and grease a 12-cup muffin tin generously with cooking spray or a light brush of olive oil. This step matters more than you think—it's the difference between muffins that slide out and ones that crumble.
Whisk the Base:
In a large bowl, whisk together the eggs and milk until the mixture is smooth and slightly frothy. You want to see tiny bubbles forming on the surface, which means the eggs will bake up light and airy.
Fold in the Fillings:
Stir in the cheddar, bell peppers, onions, bacon, salt, pepper, garlic powder, and paprika until everything is evenly distributed. The mixture should look colorful and chunky, with bits of bacon and vegetables suspended throughout.
Fill the Tins:
Pour the egg mixture into each muffin cup, filling them about two-thirds full to allow room for the muffins to rise. I like to use a small ladle or measuring cup for even portions.
Bake Until Golden:
Slide the tin into the oven and bake for 18 to 20 minutes, until the tops are set and lightly golden. A toothpick inserted into the center should come out clean, with no wet egg clinging to it.
Cool and Remove:
Let the muffins cool in the tin for 5 minutes, then gently run a knife around the edges to loosen them. They should pop out easily, still warm and slightly steaming.
Serve or Store:
Enjoy them right away, or let them cool completely before storing in an airtight container in the fridge for up to five days. Reheat in the microwave for about 30 seconds and they taste just as good as fresh.
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Stir sauces, sauté vegetables, and serve meals gently while adding a charming touch to everyday cooking.
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Freshly baked Breakfast Egg Muffins packed with fluffy scrambled eggs, colorful bell peppers, and crumbled bacon, ideal for a gluten-free morning meal. Save
Freshly baked Breakfast Egg Muffins packed with fluffy scrambled eggs, colorful bell peppers, and crumbled bacon, ideal for a gluten-free morning meal. | freshkhubz.com

One winter morning, my daughter grabbed two of these muffins on her way out the door, still in her pajamas and running late for school. She texted me later that day saying they were the only reason she made it through her morning classes without her stomach growling. That small moment of knowing I'd made her day a little easier stuck with me. These muffins aren't fancy, but they show up when it matters.

How to Store and Reheat

Once the muffins have cooled completely, stack them in an airtight container with a piece of parchment between layers if you're worried about them sticking. They'll keep in the fridge for up to five days, and I've found they actually taste better the next day once the flavors have had time to meld. To reheat, microwave one or two muffins for 25 to 30 seconds, or warm them in a 300°F oven for about 10 minutes if you're reheating a larger batch. They also freeze beautifully—just wrap each muffin individually in plastic wrap, toss them in a freezer bag, and freeze for up to three months. Thaw overnight in the fridge and reheat as usual.

Ways to Customize

These muffins are incredibly forgiving and love to be personalized. I've swapped bacon for spicy Italian sausage when I wanted a little heat, or left out the meat entirely and loaded them with sautéed mushrooms and spinach for a vegetarian version. Cheese is another easy place to play—feta adds a tangy sharpness, mozzarella makes them milder and stretchier, and pepper jack brings a kick. You can also toss in diced tomatoes, jalapeños, or even leftover roasted vegetables. The egg base holds it all together, so trust your instincts and use what you have.

Serving Suggestions

I love serving these muffins with a dollop of salsa or a drizzle of hot sauce for a little brightness and acidity. They're also great alongside fresh fruit, a simple green salad, or even tucked into a toasted English muffin for a makeshift breakfast sandwich. If you're feeding a crowd, arrange them on a platter with some avocado slices and cherry tomatoes for a casual brunch spread that feels effortless but thoughtful.

  • Serve with a side of Greek yogurt and fresh berries for a balanced, protein-packed breakfast.
  • Pair with a crisp arugula salad dressed lightly with lemon and olive oil for a savory brunch plate.
  • Wrap one in a tortilla with avocado and salsa for a quick breakfast burrito on the go.
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Savory Breakfast Egg Muffins filled with diced onions and bell peppers, topped with melted cheddar and bacon crumbles, ready for a quick breakfast. Save
Savory Breakfast Egg Muffins filled with diced onions and bell peppers, topped with melted cheddar and bacon crumbles, ready for a quick breakfast. | freshkhubz.com

These little muffins have become my go-to whenever I need to feel like I have my mornings under control. They're proof that a little bit of planning can turn a hectic week into something manageable, one warm bite at a time.

Recipe FAQs

Can I make these egg muffins ahead of time?

Absolutely. These muffins keep well in an airtight container in the refrigerator for up to 5 days. They also freeze beautifully—wrap individually and store for up to 3 months. Thaw overnight in the fridge before reheating.

What vegetables work best in these muffins?

Bell peppers and onions provide classic flavor, but diced spinach, mushrooms, zucchini, or cherry tomatoes also work wonderfully. Sauté watery vegetables like zucchini briefly before adding to prevent excess moisture.

How do I know when the muffins are done baking?

The muffins are ready when they're set and lightly golden on top, typically after 18-20 minutes at 350°F. Insert a toothpick into the center—it should come out clean when fully cooked.

Can I make these vegetarian?

Simply omit the bacon and add extra vegetables or plant-based proteins. Spinach, mushrooms, or diced tomatoes make excellent vegetarian additions. You can also use vegetarian sausage crumbles.

What's the best way to reheat these muffins?

Microwave individual muffins for 30-45 seconds until heated through. For better texture, reheat in a 350°F oven for 5-8 minutes. Avoid overheating, which can make the eggs rubbery.

Can I use egg whites instead of whole eggs?

You can substitute liquid egg whites, though the muffins may be less rich. Use about 1.5 cups of egg whites to replace 6 whole eggs. Consider adding extra cheese or healthy fats to maintain flavor and texture.

Breakfast Egg Muffins with Bacon

Protein-packed muffins with eggs, cheese, and vegetables. Ideal for meal prep and quick mornings.

Prep Time
10 minutes
Cook Time
20 minutes
Overall Time
30 minutes
Created by Amelia Griffin


Skill Level Easy

Cuisine American

Makes 6 Portions

Dietary Details No Gluten, Low Carb

What You Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil for muffin tin

How To Make It

Step 01

Preheat Oven: Preheat oven to 350°F (175°C).

Step 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine Wet Ingredients: In a large mixing bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Fold in Remaining Ingredients: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly mixed.

Step 05

Fill Muffin Tin: Pour the mixture into the prepared muffin tin, filling each cup approximately 2/3 full.

Step 06

Bake: Bake for 18 to 20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Step 07

Cool and Remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

Tools You Need

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergen Details

Carefully review ingredients for allergens and check with a health expert if you’re unsure.
  • Contains eggs and dairy (milk/cheddar cheese)
  • May contain pork depending on protein selection
  • Verify all sausage and processed ingredients are certified gluten-free

Nutrition Per Serving

Nutritional info is for general reference only and isn’t a substitute for qualified advice.
  • Calories: 150
  • Fats: 10 g
  • Carbohydrates: 2 g
  • Proteins: 11 g